PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre11.g467581.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family GATA
Protein Properties Length: 1197aa    MW: 112523 Da    PI: 6.5264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre11.g467581.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.7e-15877909133
                GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkk 33 
                         C nCgt++Tp WR+++ dg + LCnaCGly+ k+
  Cre11.g467581.t1.1 877 CKNCGTKSTPFWRKDKnDGRP-LCNACGLYFSKN 909
                         ****************78888.*********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-12871922IPR000679Zinc finger, GATA-type
PROSITE profilePS5011418.373871929IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-18872923IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-12873920No hitNo description
CDDcd002024.09E-16876923No hitNo description
PfamPF003202.6E-11877909IPR000679Zinc finger, GATA-type
PROSITE patternPS003440877902IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1197 aa     Download sequence    Send to blast
MVLATHDGNG ATTTNDGSQR SQPETSQEDP ITTKVALNHD EQDDAKSGSG ANLGLPMPGA  60
GLNGGTMGGG GAGGGMSPAA AAAMMNSAMN PMAAAFSAMN MGGMGGANNP MAQAMQAAMA  120
GGMGGGMNPM AQMMQAMGGM GGMGGMGGMG GMGGMGQQQA AMAQAMQAMG TGGMGGMGGM  180
GGMGGMQYNP AAYMQQMMGP FAAMGMGGGM PGMMGAAAGA NGAAATSGAG GNANGTGASG  240
AGNGSNGGAA AAAGAAGSPG GAGAAAGGGG AGGGGGGGTP SGGSAGPNDV VTGMPLADIA  300
QQWQMAQQQQ AMMMYWWQMW MMSMMGYGGM GGMGPMAAAM GGGAGGGGGA DPASQMQAMM  360
ASMMGGGPMG GMGGMGNPAQ YQAMMQAMMM QMGAGMGGMG GMGGASNPMA AMMASMMGGG  420
GAAGANGAGA GAGGAAAGGP AAQWMQQAQA MQAAMAGAMG GGGANGMMGG MGPMAGMMNG  480
MGGMGAMPGM MGGMDPSAMA AAMGGASPAA AAAAQQQAQQ QQQQAAQAQA QAHAQAHQHA  540
HQQQQQQHAQ QHQQHQQHQQ QQPHQPQLPV QPQGHPGSTP ASATMGPMAV AMGFKGYHHH  600
QQQQHQHTPH HHDPSNGGHV APDSSPPHHM GGAGGAAADG GLASGSAGID PMDAAGGGGG  660
GGVLESPDDV DMVGVAASMG LNPHDMLGAG PMHGMLHGMH VPPGMGPMGP MGMLMLPANS  720
DEAYQEEDEG GSEVEDGDDS DAHQAFGSSQ HASGSHAQHQ QAAQHAQHNG YGQPHLQQHG  780
AAAAAGHYAG PQGVPQANPH QLAAAAAVLS AAAASAKRSL DQQGGGGGSN GFMARGGSSA  840
GLGGAGGLSG SNSNDSKRGR RATKEQKVGS QCAGKVCKNC GTKSTPFWRK DKNDGRPLCN  900
ACGLYFSKND APRPKILWKQ DEQAAAAARE GAGGASAPPS GGGSGSGAAP AAASANPLLN  960
DNSAAAAALV NAMTSRGLNP AAAISAIAAA AANANAKAGG TSPPGSSSGA PGAACAGAGG  1020
AGGVMGPAGA PGAVVAPGAA GAPPRPMQPN YAAMAQVAML AAAAAAKNGA AAAAAAAAAG  1080
GAPGAAGARP PPPLGNPVAA LAAAAAAMVR AGGGGIPGAT GAPGAAGLPA ALAAAAAVAQ  1140
SNQTAALLAA GAPGAGSPPP PLPPAGGSPV LIGADVGAVD AAVAPAALPE IKAEAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre11.g467581.t1.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111